I am using the following script to clear all iptables rules. I use the script when I am debugging my iptables rules.
#!/bin/bash
/sbin/iptables -P INPUT ACCEPT
/sbin/iptables -P OUTPUT ACCEPT
/sbin/iptables -P FORWARD ACCEPT
/sbin/iptables -F
/sbin/iptables -X
for table in filter nat mangle; do
/sbin/iptables -t $table -F
/sbin/iptables -t $table -X
/sbin/iptables -t $table -Z
done